On The Notion of Percentage Nucleotide Concentration of Genome Sequences in Terms of Cellular Automata Evolutions of Adjoints Sequences

Prashanthi Govindarajan; Sathya Govindarajan; Ethirajan Govindarajan

On The Notion of Percentage Nucleotide Concentration of Genome Sequences in Terms of Cellular Automata Evolutions of Adjoints Sequences

Prashanthi Govindarajan *

Contact

Sathya Govindarajan

Contact

Ethirajan Govindarajan

Contact

On The Notion of Percentage Nucleotide Concentration of Genome Sequences in Terms of Cellular Automata Evolutions of Adjoints Sequences

Article Fingerprint

ReserarchID

CSTW2TQL

On The Notion of Percentage Nucleotide Concentration of Genome Sequences in Terms of Cellular Automata Evolutions of Adjoints Sequences Banner

Key Research Insights

Synthesized scholarly intelligence & interactive research assistant

Abstract

This paper proposes a novel concept called “Percentage Nucleotide Concentration of genomes” in terms of cellular automata evolutions of adjoints of Adenine, Thymine, Guanine, and Cytosine. The adjoints of the given a genome sequenceare the characteristic binary string sequences. For example, the adjoint of Adenine of a given genome sequence is a binary string consisting of 0’s and 1’s where 1’s corresponds to the presence of Adenine in the genome sequence. So, one can have four adjoint sequences of Adenine, Thymine, Guanine, and Cytosine corresponding to a given genome sequence. One-dimensional three neighborhood binary value cellular automata rules could be applied to an adjoint sequence and the desired number of evolutions obtained.These rules aredefined by linear Boolean functions and one can have 256 such linear Boolean functions.Nucleotide concentration is computed for an adjoint sequence and its variation evaluated for its successive evolutions based on a cellular automaton rule.

References

30 Cites in Article

Reference Format

Colin Barras (2013). Your face may have been sculpted by junk DNA.
E Pennisi (2012). ENCODE Project Writes Eulogy for Junk DNA.
(2012). An integrated encyclopedia of DNA elements in the human genome.
Fabrico Costa,Kevin Morris (2012). Non-Coding RNAs and Epigenetic Regulation of Gene Expression: Drivers of Natural Selection. Edited by Kevin V. Morris. Norfolk (United Kingdom): Caister Academic Press. $310.00. x + 216 p.; ill.; index. ISBN: 978-1-904455-94-3. 2012..
Nessa Carey (2015). Junk DNA.
Robin Mckie (2013). Scientists attacked over claim that 'junk DNA' is vital to life.
Sean Eddy (2012). The C-value paradox, junk DNA and ENCODE.
W Doolittle,Ford (2013). Is junk DNA bunk? A critique of ENCODE.
Alexander Palazzo,T Gregory (2014). The Case for Junk DNA.
Dan Graur,Yichen Zheng,Nicholas Price,R Azevedo,Rebecca Zufall,E Elhaik (2013). On the Immortality of Television Sets: "Function" in the Human Genome According to the Evolution-Free Gospel of ENCODE.
Chris Ponting,Ross Hardison (2011). What fraction of the human genome is functional?.
Manolis Kellis,Barbara Wold,Michael Snyder,Bradley Bernstein,Anshul Kundaje,Georgi Marinov,Lucas Ward,Ewan Birney,Gregory Crawford,Job Dekker,Ian Dunham,Laura Elnitski,Peggy Farnham,Elise Feingold,Mark Gerstein,Morgan Giddings,David Gilbert,Thomas Gingeras,Eric Green,Roderic Guigo,Tim Hubbard,Jim Kent,Jason Lieb,Richard Myers,Michael Pazin,Bing Ren,John Stamatoyannopoulos,Zhiping Weng,Kevin White,Ross Hardison (2014). Defining functional DNA elements in the human genome.
Chris Rands,Stephen Meader,Chris Ponting,Gerton Lunter (2014). 8.2% of the Human Genome Is Constrained: Variation in Rates of Turnover across Functional Element Classes in the Human Lineage.
John Mattick,Marcel Dinger (2013). The extent of functionality in the human genome.
(2012). Non-Coding RNAs and Epigenetic Regulation of Gene Expression: Drivers of Natural Selection. Edited by Kevin V. Morris. Norfolk (United Kingdom): Caister Academic Press. $310.00. x + 216 p.; ill.; index. ISBN: 978-1-904455-94-3. 2012..
G Elgar,T; Vavouri,Vavouri (2008). Tuning in to the signals: noncoding sequence conservation in vertebrate genomes.
T Gregory,Paul Hebert (1999). The Modulation of DNA Content: Proximate Causes and Ultimate Consequences.
Wayne Wahls,Linda Wallace,Peter Moore (1990). Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells.
Peter Waterhouse,Roger Hellens (2015). Coding in non-coding RNAs.
Min Li,Christian Marin‐muller,Uddalak Bharadwaj,Kwong‐hon Chow,Qizhi Yao,Changyi Chen (2009). MicroRNAs: Control and Loss of Control in Human Physiology and Disease.
Axel Visel,Edward Rubin,Len Pennacchio (2009). Genomic views of distant-acting enhancers.
Henrik Nielsen,Steinar Johansen (2009). Group I introns: Moving in new directions.
Deyou Zheng,Adam Frankish,Robert Baertsch,Philipp Kapranov,Alexandre Reymond,Siew Choo,Yontao Lu,France Denoeud,Stylianos Antonarakis,Michael Snyder,Yijun Ruan,Chia-Lin Wei,Thomas Gingeras,Roderic Guigó,Jennifer Harrow,Mark Gerstein (2007). Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
C Marshall,E Raff,R Raff (1994). Dollo's law and the death and resurrection of genes..
Yusuf Tutar (2012). Pseudogenes.
D Petrov,Dl; Hartl,Hartl (2000). Pseudogene evolution and natural selection for a compact genome.
Steven Ponicsan,Jennifer Kugel,James Goodrich (2010). Genomic gems: SINE RNAs regulate mRNA production.
J Häsler,T Samuelsson,K Strub (2007). Useful ‘junk’: Alu RNAs in the human transcriptome.
Ryan Walters,Jennifer Kugel,James Goodrich (2009). InvAluable junk: The cellular impact and function of Alu and B2 RNAs.
P Nelson,P Hooley,D Roden,H Davari Ejtehadi,P Rylance,P Warren,J Martin,P Murray (2004). Human endogenous retroviruses: transposable elements with potential?.

Download References

Funding

No external funding was declared for this work.

Conflict of Interest

The authors declare no conflict of interest.

Ethical Approval

No ethics committee approval was required for this article type.

Data Availability

Not applicable for this article.

How to Cite This Article

Prashanthi Govindarajan, Sathya Govindarajan, Ethirajan Govindarajan. 2020. "On The Notion of Percentage Nucleotide Concentration of Genome Sequences in Terms of Cellular Automata Evolutions of Adjoints Sequences". Global Journal of Computer Science and Technology - G: Interdisciplinary GJCST-G Volume 20 (GJCST Volume 20 Issue G2).

More Citation Formats

Select Citation Style:

Download Citation

GJCST Volume 20 Issue G2

Explore Journals Explore Volume Read This Issue

Journal Specifications

Crossref Journal DOI 10.17406/gjcst

Print ISSN 0975-4350

e-ISSN 0975-4172

Keywords

Not Found

Classification

GJCST-G Classification F.1.1

Submission ReceivedDecember 8, 2019
Peer Review Double Blind
Handling Editor
Accepted January 5, 2020
Published January 15, 2020

Version of record

v1.2

Issue date

March 30, 2020

Language

English

Experiance in AR

Explore published articles in an immersive Augmented Reality environment. Our platform converts research papers into interactive 3D books, allowing readers to view and interact with content using AR and VR compatible devices.

View in VR

Read in 3D

Your published article is automatically converted into a realistic 3D book. Flip through pages and read research papers in a more engaging and interactive format.

View in 3D

Article Matrices

Total Views: 1.7K

Total Downloads: 151

All Trends