Parallel String Matching with Multi Core Processors-A Comparative Study for Gene Sequences

Chinta Someswara Rao

Parallel String Matching with Multi Core Processors-A Comparative Study for Gene Sequences

Chinta Someswara Rao * §

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Parallel String Matching with Multi Core Processors-A Comparative Study for Gene Sequences

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Abstract

The increase in huge amount of data is seen clearly in present days because of requirement for storing more information. To extract certain data from this large database is a very difficult task, including text processing, information retrieval, text mining, pattern recognition and DNA sequencing. So we need concurrent events and high performance computing models for extracting the data. This will create a challenge to the researchers. One of the solutions is parallel algorithms for string matching on computing models. In this we implemented parallel string matching with JAVA Multi threading with multi core processing, and performed a comparative study on Knuth Morris Pratt, Boyer Moore and Brute force string matching algorithms. For testing our system we take a gene sequence which consists of lacks of records. From the test results it is shown that the multicore processing is better compared to lower versions. Finally this proposed parallel string matching with multicore processing is better compared to other sequential approaches.

References

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Funding

No external funding was declared for this work.

Conflict of Interest

The authors declare no conflict of interest.

Ethical Approval

No ethics committee approval was required for this article type.

Data Availability

Not applicable for this article.

How to Cite This Article

Chinta Someswara Rao. 2013. "Parallel String Matching with Multi Core Processors-A Comparative Study for Gene Sequences". Global Journal of Computer Science and Technology - A: Hardware & Computation GJCST-A Volume 13 (GJCST Volume 13 Issue A1).

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GJCST Volume 13 Issue A1

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Journal Specifications

Crossref Journal DOI 10.17406/gjcst

Print ISSN 0975-4350

e-ISSN 0975-4172

Keywords

computing model DNA multicore processing parallel string mathing string matching

Classification

GJCST-A Classification B.7.1

Submission ReceivedDecember 13, 2012
Peer Review Double Blind
Handling Editor
Accepted January 3, 2013
Published January 15, 2013

Version of record

v1.2

Issue date

August 1, 2013

Language

English

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Article Matrices

Total Score: 148

Country: India

Subject: Global Journal of Computer Science and Technology

Authors: Chinta Someswara Rao, K Butchi Raju, Dr. S. Viswanadha Raju (PhD/Dr. count: 1)

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Publish Date: 2013 01, Tue

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Total Views: 4K

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