Protein and Other Biomedical Entity Name Tagging from Pdf File using NLP and Visualization of that Entity

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Md. Arif Rizvee
Md. Arif Rizvee
2
Md. Ashfakur Rahman Arju
Md. Ashfakur Rahman Arju
3
Saifuddin Mohammad Tareque
Saifuddin Mohammad Tareque
1 Daffodil International University

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Protein and other biomedical entities such as a gene, chromosome names are key elements in bioinformatics. Identifying them individually from the pdf file is very challenging. Because a text pdf document can contain lots of information, identifying them is not so much easy task. So the main focus in our project is converting the pdf file to humanreadable text file then we will have to find the gene and other entities from the GENIA tagger website database. Using natural language processing GENIA tagger will give us the name of all the protein, gene, and other biomedical entity name. After identifying them, we will save it to database. Then we will visualize the related data.

Funding

No external funding was declared for this work.

Conflict of Interest

The authors declare no conflict of interest.

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No ethics committee approval was required for this article type.

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Not applicable for this article.

Md. Arif Rizvee. 2019. \u201cProtein and Other Biomedical Entity Name Tagging from Pdf File using NLP and Visualization of that Entity\u201d. Global Journal of Computer Science and Technology - C: Software & Data Engineering GJCST-C Volume 19 (GJCST Volume 19 Issue C1): .

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GJCST Volume 19 Issue C1
Pg. 23- 25
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Crossref Journal DOI 10.17406/gjcst

Print ISSN 0975-4350

e-ISSN 0975-4172

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GJCST-C Classification: J.3
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v1.2

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April 16, 2019

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English

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Protein and other biomedical entities such as a gene, chromosome names are key elements in bioinformatics. Identifying them individually from the pdf file is very challenging. Because a text pdf document can contain lots of information, identifying them is not so much easy task. So the main focus in our project is converting the pdf file to humanreadable text file then we will have to find the gene and other entities from the GENIA tagger website database. Using natural language processing GENIA tagger will give us the name of all the protein, gene, and other biomedical entity name. After identifying them, we will save it to database. Then we will visualize the related data.

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Protein and Other Biomedical Entity Name Tagging from Pdf File using NLP and Visualization of that Entity

Md. Arif Rizvee
Md. Arif Rizvee Daffodil International University
Md. Ashfakur Rahman Arju
Md. Ashfakur Rahman Arju
Saifuddin Mohammad Tareque
Saifuddin Mohammad Tareque

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