The paper shows problems in the logistics and supply chains in the condition of enterprises in the Czech Republic. This subject was chosen because of the previous practice of the author. The top priority is screening of cost born in logistics. The paper deals with the logistics and logistics controlling as a potential source of savings and finding new possibilities for better organization and functions. It includes results of the research in the southern part of Bohemia. Data set was obtained from answers in questionnaires aimed to key issues of logistics and logistic controlling. The results of paper proved that bigger enterprises paid more attention to investigated problems – creating information sources and setting specialised departments. In the future there is a need to find the way how to establish the condition of controlling in small and medium sized enterprises.